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  5. Sacu_v1.1_s0163.g024013

Sacu_v1.1_s0163.g024013


Description : AHL clade-B transcription factor & original description: CDS=184-1167


Gene families : OG0000263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0163.g024013
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00254660 evm_27.TU.AmTr_v1... AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00041p00054250 ATAHL1, AHL1,... AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G63470 No alias AT hook motif DNA-binding family protein 0.03 OrthoFinder output from all 47 species
AT2G45850 No alias AT hook motif DNA-binding family protein 0.02 OrthoFinder output from all 47 species
AT3G61310 No alias AT hook motif DNA-binding family protein 0.03 OrthoFinder output from all 47 species
Adi_g083177 ATAHL1, AHL1 AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07653 ATAHL1, AHL1 AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21072 No alias AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene00212.t1 ATAHL1, AHL1,... AHL clade-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63974.t1 ATAHL1, AHL1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07825 ATAHL1, AHL1 AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06946 No alias AHL clade-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013426001 No alias AT-hook motif nuclear-localized protein 10... 0.02 OrthoFinder output from all 47 species
LOC_Os02g03270.1 ATAHL1, AHL1,... AT-hook motif nuclear-localized protein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58730.1 LOC_Os04g58730 AT-hook motif nuclear-localized protein 11... 0.03 OrthoFinder output from all 47 species
LOC_Os09g31470.1 LOC_Os09g31470 AT-hook motif nuclear-localized protein 10... 0.03 OrthoFinder output from all 47 species
LOC_Os11g05160.1 ATAHL1, AHL1,... AT-hook motif nuclear-localized protein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g00643 No alias AHL clade-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02074 No alias AHL clade-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g31340 No alias AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434727g0010 No alias AT-hook motif nuclear-localized protein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_29855g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Pir_g10262 No alias AHL clade-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g21961 No alias AHL clade-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010139 No alias AHL clade-B transcription factor & original description:... 0.01 OrthoFinder output from all 47 species
Solyc08g007530.4.1 ATAHL1, AHL1,... AT-hook motif nuclear-localized protein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc08g077030.4.1 Solyc08g077030 AT-hook motif nuclear-localized protein 10... 0.02 OrthoFinder output from all 47 species
Solyc08g079630.3.1 ATAHL1, AHL1,... AT-hook motif nuclear-localized protein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e006494_P001 Zm00001e006494 AT-hook motif nuclear-localized protein 9 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e010074_P004 Zm00001e010074 AT-hook motif nuclear-localized protein 10... 0.02 OrthoFinder output from all 47 species
Zm00001e013520_P002 ATAHL1, AHL1,... AT-hook motif nuclear-localized protein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e037798_P002 Zm00001e037798 AT-hook motif nuclear-localized protein 10... 0.02 OrthoFinder output from all 47 species
Zm00001e041967_P001 Zm00001e041967 AT-hook motif nuclear-localized protein 11... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032954 regulation of cytokinetic process IEP HCCA
BP GO:0032955 regulation of division septum assembly IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1901891 regulation of cell septum assembly IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005175 PPC_dom 189 299
IPR017956 AT_hook_DNA-bd_motif 135 146
No external refs found!