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  5. Sacu_v1.1_s0175.g024545

Sacu_v1.1_s0175.g024545


Description : not classified & original description: CDS=305-3223


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0175.g024545

Target Alias Description ECC score Gene Family Method Actions
Adi_g004298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g21644 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63229 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene34804.t1 Aspi01Gene34804 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64480.t1 Aspi01Gene64480 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g36071 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g31017 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g40749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05493 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Msp_g17711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g27086 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32191 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0134.g022300 CRR22 not classified & original description: CDS=1-1791 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0237.g026572 No alias not classified & original description: CDS=1-1578 0.03 OrthoFinder output from all 47 species
Sam_g25628 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004592 pantoate-beta-alanine ligase activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 894 961
IPR002885 Pentatricopeptide_repeat 165 192
IPR002885 Pentatricopeptide_repeat 643 665
IPR002885 Pentatricopeptide_repeat 238 260
IPR002885 Pentatricopeptide_repeat 469 498
IPR002885 Pentatricopeptide_repeat 440 467
IPR002885 Pentatricopeptide_repeat 365 411
IPR002885 Pentatricopeptide_repeat 567 614
IPR002885 Pentatricopeptide_repeat 668 715
IPR002885 Pentatricopeptide_repeat 263 310
No external refs found!