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  5. Sacu_v1.1_s0193.g025370

Sacu_v1.1_s0193.g025370


Description : not classified & original description: CDS=1-2208


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0193.g025370
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00191560 OTP82,... Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
Adi_g022088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Azfi_s0005.g009069 CRR22 not classified & original description: CDS=1-1992 0.08 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.07 OrthoFinder output from all 47 species
Cba_g04690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.06 OrthoFinder output from all 47 species
Ceric.15G051800.1 VAC1, ECB2,... not classified & original description: pacid=50639747... 0.06 OrthoFinder output from all 47 species
Ceric.18G001000.1 Ceric.18G001000 not classified & original description: pacid=50621627... 0.07 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.05 OrthoFinder output from all 47 species
Ceric.1Z242100.1 CRR22, Ceric.1Z242100 not classified & original description: pacid=50573437... 0.06 OrthoFinder output from all 47 species
Ceric.23G030200.1 Ceric.23G030200 not classified & original description: pacid=50609682... 0.04 OrthoFinder output from all 47 species
Ceric.26G046300.1 Ceric.26G046300 not classified & original description: pacid=50599602... 0.06 OrthoFinder output from all 47 species
Ceric.39G053500.1 Ceric.39G053500 not classified & original description: pacid=50582600... 0.07 OrthoFinder output from all 47 species
LOC_Os01g60000.1 SLO1, LOC_Os01g60000 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Pnu_g30693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g33764 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo111982 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 456 503
IPR002885 Pentatricopeptide_repeat 557 605
IPR002885 Pentatricopeptide_repeat 354 401
IPR002885 Pentatricopeptide_repeat 152 199
IPR002885 Pentatricopeptide_repeat 531 554
IPR002885 Pentatricopeptide_repeat 256 286
IPR002885 Pentatricopeptide_repeat 228 253
IPR002885 Pentatricopeptide_repeat 635 655
No external refs found!