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  5. Sacu_v1.1_s0199.g025564

Sacu_v1.1_s0199.g025564 (ATL5)


Aliases : ATL5

Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: CDS=1-1074


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0199.g025564

Target Alias Description ECC score Gene Family Method Actions
Adi_g023521 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g38248 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.08 OrthoFinder output from all 47 species
Dac_g44213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g00408 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Lfl_g38446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_9521306g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008576 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Zm00001e010029_P001 XERICO, Zm00001e010029 ubiquitin protein ligase (XERICO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 130 173
No external refs found!