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  5. Sacu_v1.1_s0216.g026048

Sacu_v1.1_s0216.g026048 (ATATM3, STA1, ATM3)


Aliases : ATATM3, STA1, ATM3

Description : subfamily ABCB transporter & original description: CDS=88-2079


Gene families : OG0002075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0216.g026048

Target Alias Description ECC score Gene Family Method Actions
Cba_g04645 ATATM3, STA1, ATM3 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z115500.1 ATATM3, STA1,... subfamily ABCB transporter & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.30G050700.1 ATATM3, STA1,... not classified & original description: pacid=50608705... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008531 riboflavin kinase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 576 611
IPR011527 ABC1_TM_dom 174 281
IPR011527 ABC1_TM_dom 282 430
IPR003439 ABC_transporter-like_ATP-bd 493 566
No external refs found!