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  5. Sacu_v1.1_s0223.g026268

Sacu_v1.1_s0223.g026268


Description : not classified & original description: CDS=1-2328


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0223.g026268
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00260120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74600,... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.02 OrthoFinder output from all 47 species
AMTR_s00095p00039180 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
AMTR_s00587p00011650 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G59600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g033331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074694 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35628 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g37733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g18493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01199.t1 OTP86, Aspi01Gene01199 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02463.t1 Aspi01Gene02463 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11731.t1 Aspi01Gene11731 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14575.t2 CRR22, Aspi01Gene14575 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18019.t1 Aspi01Gene18019 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18627.t1 Aspi01Gene18627 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18986.t1 MEF21, Aspi01Gene18986 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene20498.t1 CRR2, Aspi01Gene20498 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25448.t1 Aspi01Gene25448 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27322.t1 Aspi01Gene27322 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28051.t1 Aspi01Gene28051 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene34785.t1 Aspi01Gene34785 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene36735.t1 Aspi01Gene36735 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene39631.t1 CRR2, Aspi01Gene39631 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene41775.t1 Aspi01Gene41775 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51735.t1 Aspi01Gene51735 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55921.t1 OTP82, Aspi01Gene55921 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59237.t1 Aspi01Gene59237 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61369.t1 CRR22, Aspi01Gene61369 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61596.t1 CRR2, Aspi01Gene61596 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72589.t1 MEF22, Aspi01Gene72589 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000167 No alias not classified & original description: CDS=1-1701 0.04 OrthoFinder output from all 47 species
Azfi_s0011.g012554 No alias not classified & original description: CDS=1-2283 0.01 OrthoFinder output from all 47 species
Azfi_s0168.g054648 No alias not classified & original description: CDS=1-843 0.01 OrthoFinder output from all 47 species
Azfi_s0889.g091250 No alias not classified & original description: CDS=1-2652 0.03 OrthoFinder output from all 47 species
Azfi_s1395.g102559 No alias not classified & original description: CDS=1-912 0.01 OrthoFinder output from all 47 species
Azfi_s3922.g117339 No alias not classified & original description: CDS=1-831 0.01 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.11G087600.1 OTP84, Ceric.11G087600 not classified & original description: pacid=50595872... 0.03 OrthoFinder output from all 47 species
Dac_g16073 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08450 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g40867 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g28160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29034 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 OrthoFinder output from all 47 species
LOC_Os01g51790.1 LOC_Os01g51790 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os07g31000.1 LOC_Os07g31000 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g09617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54960 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g06160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18756 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g07356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42940 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59188 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003970 No alias not classified & original description: CDS=1-3009 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004138 No alias not classified & original description: CDS=1-2646 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009681 No alias not classified & original description: CDS=1-2907 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010179 No alias not classified & original description: CDS=88-2685 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011714 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2064 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011793 OTP84 not classified & original description: CDS=139-2724 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026331 No alias not classified & original description: CDS=1-2598 0.04 OrthoFinder output from all 47 species
Sam_g01375 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g21956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g45851 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo97289 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc10g005090.3.1 Solyc10g005090 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g28117 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g17413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 448 469
IPR002885 Pentatricopeptide_repeat 348 372
IPR002885 Pentatricopeptide_repeat 144 169
IPR002885 Pentatricopeptide_repeat 477 503
IPR002885 Pentatricopeptide_repeat 247 268
IPR002885 Pentatricopeptide_repeat 171 198
IPR002885 Pentatricopeptide_repeat 552 577
IPR002885 Pentatricopeptide_repeat 70 99
IPR002885 Pentatricopeptide_repeat 272 319
IPR002885 Pentatricopeptide_repeat 374 421
IPR046848 E_motif 695 740
IPR002885 Pentatricopeptide_repeat 601 661
No external refs found!