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  5. Sacu_v1.1_s0233.g026492

Sacu_v1.1_s0233.g026492


Description : not classified & original description: CDS=48-2072


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0233.g026492
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.09 OrthoFinder output from all 47 species
AMTR_s00029p00248070 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
AMTR_s00057p00172690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g37170... 0.05 OrthoFinder output from all 47 species
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.05 OrthoFinder output from all 47 species
Adi_g002336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036784 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g060808 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13651 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g10918 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31164 SLO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18410 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g26267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g23810 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27561 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32690 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37587 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g42859 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02394.t1 Aspi01Gene02394 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene20496.t1 CRR22, Aspi01Gene20496 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35114 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g37893 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01003650001 OTP80 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01009977001 No alias Pentatricopeptide repeat-containing protein At1g43980,... 0.08 OrthoFinder output from all 47 species
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
LOC_Os10g40920.1 LOC_Os10g40920 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
Len_g04760 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07048 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g32796 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.12 OrthoFinder output from all 47 species
Msp_g41257 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g32641 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29069 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43234 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g57991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63504 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63838 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30693 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53705 EMB2758 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014482 No alias not classified & original description: CDS=1-1119 0.02 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo107700 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo111982 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Smo112044 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.05 OrthoFinder output from all 47 species
Smo115590 REME1 Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species
Smo130453 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Smo136241 EMB2758 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Tin_g05656 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g15533 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g26720 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e032581_P001 Zm00001e032581 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 371 418
IPR002885 Pentatricopeptide_repeat 270 318
IPR002885 Pentatricopeptide_repeat 169 216
IPR002885 Pentatricopeptide_repeat 446 469
IPR002885 Pentatricopeptide_repeat 346 369
IPR046848 E_motif 494 550
IPR032867 DYW_dom 587 672
No external refs found!