Aliases : HY4, ATCRY1, BLU1, OOP2, CRY1
Description : cryptochrome photoreceptor *(CRY) & original description: CDS=677-2227
Gene families : OG0000814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000814_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G08920 | HY4, ATCRY1,... | cryptochrome 1 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g068051 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g076892 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g114249 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g03282 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g21204 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g46007 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aob_g14347 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g04905 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g01276 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g12860 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.09G012600.1 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g08579 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Mp2g17590.1 | HY4, ATCRY1,... | cryptochrome photoreceptor (CRY) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g11406 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g13274 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g02063 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g08536 | HY4, ATCRY1,... | cryptochrome photoreceptor *(CRY) & original description: none | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003724 | RNA helicase activity | IEP | HCCA |
| MF | GO:0004470 | malic enzyme activity | IEP | HCCA |
| MF | GO:0004471 | malate dehydrogenase (decarboxylating) (NAD+) activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| MF | GO:0016615 | malate dehydrogenase activity | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0030488 | tRNA methylation | IEP | HCCA |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005101 | Cryptochr/Photolyase_FAD-bd | 127 | 325 |
| No external refs found! |
