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  5. Sacu_v1.1_s0321.g027231

Sacu_v1.1_s0321.g027231


Description : substrate adaptor of SCF E3 ubiquitin ligase complex & original description: CDS=1-3942


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0321.g027231
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Aev_g30904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02495.t1 Aspi01Gene02495 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009069 CRR22 not classified & original description: CDS=1-1992 0.02 OrthoFinder output from all 47 species
Azfi_s0351.g066580 No alias not classified & original description: CDS=1-3804 0.04 OrthoFinder output from all 47 species
Cba_g19054 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20769 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G099100.1 OTP86, Ceric.05G099100 not classified & original description: pacid=50578500... 0.03 OrthoFinder output from all 47 species
Ceric.23G059700.1 CRR22, Ceric.23G059700 not classified & original description: pacid=50609689... 0.03 OrthoFinder output from all 47 species
Ceric.31G020200.1 Ceric.31G020200 not classified & original description: pacid=50574865... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Dac_g12454 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27446 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26705 CRR21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023818001 CRR28 Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
LOC_Os11g29230.1 CRR22, LOC_Os11g29230 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Len_g02904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04288 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07748 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_385322g0010 OTP82 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g35200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g01886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26843 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g53095 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09801 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g33573 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019636 No alias not classified & original description: CDS=1-303 0.03 OrthoFinder output from all 47 species
Sam_g05036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g46568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54422 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040924_P001 Zm00001e040924 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 638 661
IPR002885 Pentatricopeptide_repeat 167 197
IPR002885 Pentatricopeptide_repeat 605 632
IPR002885 Pentatricopeptide_repeat 266 313
IPR002885 Pentatricopeptide_repeat 400 447
IPR002885 Pentatricopeptide_repeat 502 548
IPR010734 Copine_C 1120 1159
IPR010734 Copine_C 1160 1295
No external refs found!