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  5. Sacu_v1.1_s0533.g027470

Sacu_v1.1_s0533.g027470 (RPOC1)


Aliases : RPOC1

Description : not classified & original description: CDS=1-777


Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0533.g027470
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.16 OrthoFinder output from all 47 species
Aev_g25869 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.15 OrthoFinder output from all 47 species
Als_g17479 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32263.t1 RPOC1, Aspi01Gene32263 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01180 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.04 OrthoFinder output from all 47 species
Ceric.07G092700.1 RPOC1, Ceric.07G092700 not classified & original description: pacid=50627572... 0.03 OrthoFinder output from all 47 species
Ceric.23G081100.1 RPOC1, Ceric.23G081100 not classified & original description: pacid=50610064... 0.03 OrthoFinder output from all 47 species
Ceric.29G004700.1 RPOC1, Ceric.29G004700 not classified & original description: pacid=50625659... 0.1 OrthoFinder output from all 47 species
Ceric.29G004800.1 RPOC1, Ceric.29G004800 core component *(RpoC1) of plastid-encoded RNA... 0.08 OrthoFinder output from all 47 species
Ceric.38G010000.1 RPOC1, Ceric.38G010000 core component *(RpoC1) of plastid-encoded RNA... 0.05 OrthoFinder output from all 47 species
Gb_39909 RPOC1 RpoC1 core component plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os02g24614.1 RPOC1, LOC_Os02g24614 RpoC1 core component plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Mp4g02290.1 RPOC1 DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.04 OrthoFinder output from all 47 species
Pir_g09480 RPOC1 core component *(RpoC1) of plastid-encoded RNA... 0.08 OrthoFinder output from all 47 species
Solyc01g017370.2.1 RPOC1, Solyc01g017370 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.07 OrthoFinder output from all 47 species
Solyc01g017470.3.1 RPOC1, Solyc01g017470 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 170 226
No external refs found!