Adi_g004816 (SYD, CHR3)

Aliases : SYD, CHR3

Description : not classified & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g004816

Target	Alias	Description	ECC score	Gene Family Method
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.02	OrthoFinder output from all 47 species
Adi_g011955	SYD, CHR3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058025	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g078005	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g082550	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g107421	SYD, CHR3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g41954	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Als_g01971	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g29989	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene14150.t2	CHR11, Aspi01Gene14150	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene24030.t1	CHR5, Aspi01Gene24030	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene47132.t1	SYD, CHR3,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene52538.t1	PKL, GYM, CHR6,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene62384.t1	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene62384.t3	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.06	OrthoFinder output from all 47 species
Ehy_g03342	ATCHR12	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g18387	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Lfl_g04300	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g18803	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Pp3c20_4650V3.1	ATCHR12, Pp3c20_4650	Homeotic gene regulator	0.01	OrthoFinder output from all 47 species
Ppi_g04716	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Ppi_g07635	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Solyc02g085390.4.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species
Spa_g21583	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	OrthoFinder output from all 47 species
Spa_g24876	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g36192	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	8	123

External Links

No external refs found!

Adi_g004816 (SYD, CHR3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation