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  5. Adi_g011343

Adi_g011343


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g011343

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00140p00035900 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G69940 ATPPME1, PPME1 Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G07410 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G07420 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16842.t2 Aspi01Gene16842 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71978.t1 Aspi01Gene71978 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G069000.1 Ceric.10G069000 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.24G024700.1 Ceric.24G024700 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.35G046900.1 Ceric.35G046900 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G019200.1 Ceric.37G019200 pectin methylesterase & original description:... 0.05 OrthoFinder output from all 47 species
Dac_g00830 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09998 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07472 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15370 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03343 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06587 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12393 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014641001 QRT1 Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Gb_23209 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os01g19440.1 LOC_Os01g19440 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Ore_g20425 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g23584 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20523 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00760 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26530 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50211 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g008530.2.1 Solyc12g008530 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Spa_g07165 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49578 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20547 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002891_P001 Zm00001e002891 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Zm00001e007306_P001 Zm00001e007306 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e032213_P001 Zm00001e032213 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 101 388
No external refs found!