Aliases : ATTZF1, ATCTH
Description : regulatory factor *(TZF) of mRNA stress granule formation & original description: none
Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Adi_g016518 | |
| Cluster | HCCA: Cluster_319 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G40140 | SZF2, ATSZF2, ZFAR1, CZF1 | zinc finger (CCCH-type) family protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g045996 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g113678 | No alias | regulatory factor *(TZF) of mRNA stress granule... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g01096 | No alias | regulatory factor *(TZF) of mRNA stress granule... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene14185.t1 | Aspi01Gene14185 | regulatory factor *(TZF) of mRNA stress granule... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.05G100900.1 | Ceric.05G100900 | regulatory factor *(TZF) of mRNA stress granule... | 0.05 | OrthoFinder output from all 47 species | |
| Cre07.g326150 | No alias | RNA biosynthesis.transcriptional activation.C3H zinc... | 0.01 | OrthoFinder output from all 47 species | |
| Dde_g24267 | ATTZF1, ATCTH | regulatory factor *(TZF) of mRNA stress granule... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g04434 | No alias | regulatory factor *(TZF) of mRNA stress granule... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g03760.1 | LOC_Os05g03760 | mRNA-binding regulatory factor (TZF) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g10670.1 | LOC_Os05g10670 | mRNA-binding regulatory factor (TZF) | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g20985 | ATTZF1, ATCTH | regulatory factor *(TZF) of mRNA stress granule... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g16736 | No alias | regulatory factor *(TZF) of mRNA stress granule... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c13_50V3.1 | ATTZF1, ATCTH, Pp3c13_50 | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.01 | OrthoFinder output from all 47 species | |
| Smo441947 | No alias | RNA biosynthesis.transcriptional activation.C3H zinc... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e027566_P001 | Zm00001e027566 | mRNA-binding regulatory factor (TZF) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0046872 | metal ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006354 | DNA-templated transcription elongation | IEP | HCCA |
| BP | GO:0006368 | transcription elongation by RNA polymerase II | IEP | HCCA |
| BP | GO:0006486 | protein glycosylation | IEP | HCCA |
| BP | GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | IEP | HCCA |
| BP | GO:0007186 | G protein-coupled receptor signaling pathway | IEP | HCCA |
| CC | GO:0008023 | transcription elongation factor complex | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008373 | sialyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019720 | Mo-molybdopterin cofactor metabolic process | IEP | HCCA |
| BP | GO:0032324 | molybdopterin cofactor biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0043413 | macromolecule glycosylation | IEP | HCCA |
| BP | GO:0043545 | molybdopterin cofactor metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051189 | prosthetic group metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0070085 | glycosylation | IEP | HCCA |
| CC | GO:0070449 | elongin complex | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000571 | Znf_CCCH | 133 | 154 |
| No external refs found! |
