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  5. Adi_g024582

Adi_g024582


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g024582

Target Alias Description ECC score Gene Family Method Actions
AT3G22690 No alias CONTAINS InterPro DOMAIN/s: Protein of unknown function... 0.02 OrthoFinder output from all 47 species
AT3G24000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g021159 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10387 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11263 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26499 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28190 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06425 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02316.t1 Aspi01Gene02316 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31781.t1 Aspi01Gene31781 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49181.t1 Aspi01Gene49181 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000167 No alias not classified & original description: CDS=1-1701 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010932 REME1 not classified & original description: CDS=1-1479 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015711 No alias not classified & original description: CDS=1-3111 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031381 MEF19 not classified & original description: CDS=1-1371 0.03 OrthoFinder output from all 47 species
Azfi_s0652.g081079 No alias not classified & original description: CDS=1-2169 0.02 OrthoFinder output from all 47 species
Cba_g05960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78384 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.02 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.02 OrthoFinder output from all 47 species
Ceric.19G003900.1 Ceric.19G003900 not classified & original description: pacid=50575192... 0.02 OrthoFinder output from all 47 species
Ceric.20G079700.1 DOT4, Ceric.20G079700 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.23G020600.1 Ceric.23G020600 not classified & original description: pacid=50609730... 0.02 OrthoFinder output from all 47 species
Ceric.29G064900.1 Ceric.29G064900 not classified & original description: pacid=50625208... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.28 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g14916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07665 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01030836001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Gb_16062 OTP84 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
LOC_Os06g08650.1 LOC_Os06g08650 Pentatricopeptide repeat-containing protein At2g03380,... 0.03 OrthoFinder output from all 47 species
Len_g18053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54965 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04822 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06198 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g22099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g22746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27830 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19959 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03426 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03818 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22601 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23561 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002764 No alias not classified & original description: CDS=1-2754 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009681 No alias not classified & original description: CDS=1-2907 0.02 OrthoFinder output from all 47 species
Smo92456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Solyc01g102690.4.1 Solyc01g102690 Pentatricopeptide repeat-containing protein At3g49710... 0.03 OrthoFinder output from all 47 species
Spa_g21770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17628 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 546 592
IPR002885 Pentatricopeptide_repeat 141 189
IPR002885 Pentatricopeptide_repeat 243 289
IPR002885 Pentatricopeptide_repeat 823 846
IPR002885 Pentatricopeptide_repeat 751 780
IPR002885 Pentatricopeptide_repeat 621 646
IPR002885 Pentatricopeptide_repeat 419 443
IPR002885 Pentatricopeptide_repeat 722 748
IPR002885 Pentatricopeptide_repeat 447 477
IPR002885 Pentatricopeptide_repeat 787 812
IPR002885 Pentatricopeptide_repeat 318 341
IPR002885 Pentatricopeptide_repeat 649 679
IPR002885 Pentatricopeptide_repeat 520 542
IPR002885 Pentatricopeptide_repeat 346 374
No external refs found!