Aliases : UPF1, ATUPF1, LBA1
Description : not classified & original description: none
Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00142490 | UPF1, ATUPF1,... | RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... | 0.03 | OrthoFinder output from all 47 species | |
| AT5G47010 | UPF1, ATUPF1, LBA1 | RNA helicase, putative | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g29734 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g16050 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g22322 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g31771 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g36240 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g20574 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g19605 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g22041 | UPF1, ATUPF1, LBA1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g31340.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.02 | OrthoFinder output from all 47 species | |
| Len_g20630 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04285 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10326503g0010 | UPF1, ATUPF1, LBA1 | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.02 | OrthoFinder output from all 47 species | |
| MA_10436671g0010 | UPF1, ATUPF1, LBA1 | Regulator of nonsense transcripts 1 homolog... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g13210 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g52670 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g10497 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g29675 | No alias | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc08g007110.4.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g08453 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g48750 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e010427_P002 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0003951 | NAD+ kinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006739 | NADP metabolic process | IEP | HCCA |
| BP | GO:0006741 | NADP biosynthetic process | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019359 | nicotinamide nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0019362 | pyridine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0019363 | pyridine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046496 | nicotinamide nucleotide metabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0072524 | pyridine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072525 | pyridine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR041679 | DNA2/NAM7-like_C | 6 | 68 |
| No external refs found! |
