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  5. Adi_g054785

Adi_g054785


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g054785

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g112695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g008091 No alias not classified & original description: CDS=1-1311 0.04 OrthoFinder output from all 47 species
Azfi_s0037.g026030 No alias not classified & original description: CDS=422-1717 0.02 OrthoFinder output from all 47 species
Azfi_s0288.g063213 No alias not classified & original description: CDS=60-1199 0.03 OrthoFinder output from all 47 species
Cba_g09693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G048000.1 Ceric.03G048000 not classified & original description: pacid=50572345... 0.02 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.03 OrthoFinder output from all 47 species
Ceric.30G049700.1 Ceric.30G049700 not classified & original description: pacid=50608801... 0.02 OrthoFinder output from all 47 species
Ceric.35G060600.1 Ceric.35G060600 not classified & original description: pacid=50581737... 0.03 OrthoFinder output from all 47 species
Ceric.38G017100.1 Ceric.38G017100 not classified & original description: pacid=50580043... 0.04 OrthoFinder output from all 47 species
Cre10.g428200 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g03739 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014729001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_29428 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_32677 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g02263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g45356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_93349g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MpVg00970.1 No alias No annotation 0.01 OrthoFinder output from all 47 species
Nbi_g12149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11715 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g42383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21333 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 20 87
IPR000504 RRM_dom 107 176
No external refs found!