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  5. Adi_g055868

Adi_g055868


Description : histone demethylase *(KDM5) & original description: none


Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g055868

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.06 OrthoFinder output from all 47 species
AMTR_s00092p00144240 PKDM7D,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.09 OrthoFinder output from all 47 species
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.07 OrthoFinder output from all 47 species
Adi_g020525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06155 PKDM7D not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15008 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08112 No alias histone demethylase *(KDM5) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g05144 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g13634 PKDM7D histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28386.t1 Aspi01Gene28386 histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68630.t1 PKDM7D, Aspi01Gene68630 histone demethylase *(PKDM7) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G024900.1 Ceric.01G024900 histone demethylase *(KDM5) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.09G000100.1 PKDM7D, Ceric.09G000100 histone demethylase *(PKDM7) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.28G058700.1 PKDM7D, Ceric.28G058700 histone demethylase *(PKDM7) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g07179 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14428 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08688 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 OrthoFinder output from all 47 species
GSVIVT01023517001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.07 OrthoFinder output from all 47 species
GSVIVT01028351001 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species
LOC_Os05g10770.1 PKDM7D, LOC_Os05g10770 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
Len_g14189 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18977 PKDM7D histone demethylase *(PKDM7) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g04296 No alias histone demethylase *(KDM5) & original description: none 0.07 OrthoFinder output from all 47 species
MA_10434186g0010 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
MA_10436180g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_11526g0010 No alias Putative lysine-specific demethylase JMJ16... 0.06 OrthoFinder output from all 47 species
MA_91656g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp6g20340.1 PKDM7D histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Msp_g13349 No alias histone demethylase *(KDM5) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g02485 PKDM7D histone demethylase *(PKDM7) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38705 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g17312 PKDM7D histone demethylase *(PKDM7) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15994 No alias histone demethylase *(KDM5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58500 PKDM7D histone demethylase *(PKDM7) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013848 No alias histone demethylase *(KDM5) & original description: CDS=319-5874 0.05 OrthoFinder output from all 47 species
Sam_g11634 No alias histone demethylase *(KDM5) & original description: none 0.06 OrthoFinder output from all 47 species
Solyc08g081000.3.1 Solyc08g081000 histone demethylase (KDM5). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Spa_g17545 No alias histone demethylase *(KDM5) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g12700 No alias histone demethylase *(KDM5) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e030938_P001 PKDM7D, Zm00001e030938 histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR004198 Znf_C5HC2 620 672
IPR019787 Znf_PHD-finger 241 286
IPR001606 ARID_dom 96 184
IPR003349 JmjN 26 59
IPR013637 Lys_sp_deMease-like_dom 1145 1304
IPR013637 Lys_sp_deMease-like_dom 815 945
IPR013637 Lys_sp_deMease-like_dom 907 1002
IPR013637 Lys_sp_deMease-like_dom 956 1138
IPR003347 JmjC_dom 411 527
No external refs found!