Adi_g058025 (CHR01, CHR1, CHA1,...)

Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1

Description : chromatin remodeling factor *(DDM1) & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g058025

Target	Alias	Description	ECC score	Gene Family Method
Adi_g004816	SYD, CHR3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g011534	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g068298	SYD, CHR3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g59182	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene14150.t2	CHR11, Aspi01Gene14150	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene47130.t1	SYD, CHR3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene47132.t1	SYD, CHR3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene52538.t1	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62384.t3	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Ceric.21G081900.1	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000545.10	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g22364	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g05806	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g15911	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
GSVIVT01035901001	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
LOC_Os06g08480.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
MA_104034g0010	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species
MA_77097g0010	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp4g12200.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.03	OrthoFinder output from all 47 species
Ppi_g07635	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sam_g17473	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo102849	ATCHR12	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Spa_g02554	PKL, GYM, CHR6,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g36192	CHR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e011541_P001	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	252	551
IPR001650	Helicase_C	574	687

External Links

No external refs found!

Adi_g058025 (CHR01, CHR1, CHA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation