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  5. Adi_g087129

Adi_g087129


Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g087129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00263610 ABCB19,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00109940 PGP11,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AT3G28345 No alias ABC transporter family protein 0.02 OrthoFinder output from all 47 species
AT4G25960 PGP2 P-glycoprotein 2 0.03 OrthoFinder output from all 47 species
Adi_g025752 ABCB19,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24244 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18810 PGP2 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24610 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36046 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene08455.t1 PGP11, Aspi01Gene08455 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12320.t2 PGP2, Aspi01Gene12320 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28299.t1 Aspi01Gene28299 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene52651.t1 PGP2, Aspi01Gene52651 subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000572.4 ATPGP4, PGP4, ABCB4, MDR4 ABC transporter B family member 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g33694 No alias subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g07186 ATPGP4, PGP4, ABCB4, MDR4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007586001 No alias Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
GSVIVT01028256001 PGP11 Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Gb_02468 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_02469 No alias subfamily ABCB transporter 0.06 OrthoFinder output from all 47 species
Gb_08706 No alias subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
LOC_Os01g34970.1 PGP11, LOC_Os01g34970 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os01g35030.1 PGP11, LOC_Os01g35030 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os01g50070.1 LOC_Os01g50070 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g50080.1 ATPGP4, PGP4,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os01g50160.1 PGP11, LOC_Os01g50160 subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
LOC_Os02g09720.1 LOC_Os02g09720 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_102299g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
MA_111099g0010 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_3448627g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_636449g0010 No alias subfamily ABCB transporter 0.06 OrthoFinder output from all 47 species
MA_83806g0010 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Mp2g02910.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp2g11920.1 ABCB19,... subfamily ABCB transporter 0.01 OrthoFinder output from all 47 species
Mp3g11830.1 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp7g04390.1 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.01 OrthoFinder output from all 47 species
Mpzg01120.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g17749 ABCB19,... subfamily ABCB transporter & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g26680 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36979 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03862 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g41769 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29607 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30543 PGP18 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33236 ABCB19,... ABC-B-type transporter *(AMN3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g38163 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g50526 PGP11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57324 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g07564 PGP20 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g16181 PGP11 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c17_16450V3.1 ABCB19,... ATP binding cassette subfamily B19 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014291 PGP2 subfamily ABCB transporter & original description: CDS=1-4248 0.03 OrthoFinder output from all 47 species
Sam_g48720 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Smo92485 ABCB19,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Solyc05g013890.3.1 Solyc05g013890 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Solyc06g009290.4.1 PGP21, Solyc06g009290 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Zm00001e041008_P003 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Zm00001e041087_P002 Zm00001e041087 subfamily ABCB transporter 0.07 OrthoFinder output from all 47 species
Zm00001e041760_P001 ABCB19,... auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 445 593
IPR003439 ABC_transporter-like_ATP-bd 1084 1232
IPR011527 ABC1_TM_dom 101 365
IPR011527 ABC1_TM_dom 744 1013
No external refs found!