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  5. Ehy_g25402

Ehy_g25402 (XYL4, ATBXL4)


Aliases : XYL4, ATBXL4

Description : EC_3.2 glycosylase & original description: none


Gene families : OG0001022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g25402
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00188970 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00246460 XYL4, ATBXL4,... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
AT1G78060 No alias Glycosyl hydrolase family protein 0.03 OrthoFinder output from all 47 species
Dac_g20398 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Gb_26639 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 OrthoFinder output from all 47 species
LOC_Os01g19220.1 ATBXL2, BXL2,... bifunctional alpha-L-arabinofuranosidase and... 0.02 OrthoFinder output from all 47 species
LOC_Os04g54810.1 XYL4, ATBXL4,... bifunctional alpha-L-arabinofuranosidase and... 0.05 OrthoFinder output from all 47 species
LOC_Os11g19210.1 LOC_Os11g19210 bifunctional alpha-L-arabinofuranosidase and... 0.03 OrthoFinder output from all 47 species
MA_10436568g0020 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 OrthoFinder output from all 47 species
MA_77922g0010 XYL4, ATBXL4 bifunctional alpha-L-arabinofuranosidase and... 0.02 OrthoFinder output from all 47 species
Nbi_g19793 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27870 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36714 XYL4, ATBXL4 EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g10735 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Smo103038 ATBXL2, BXL2 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
Solyc01g079570.3.1 ATBXL2, BXL2,... bifunctional alpha-L-arabinofuranosidase and... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR002772 Glyco_hydro_3_C 432 666
IPR001764 Glyco_hydro_3_N 132 390
IPR026891 Fn3-like 735 803
No external refs found!