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  5. Nbi_g00483

Nbi_g00483


Description : not classified & original description: none


Gene families : OG0000526 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g00483
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00257810 evm_27.TU.AmTr_v1... Remorin OS=Solanum tuberosum 0.04 OrthoFinder output from all 47 species
Adi_g014534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20509 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12798 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g28781 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g50861 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0217.g058560 No alias not classified & original description: CDS=1-231 0.04 OrthoFinder output from all 47 species
Ceric.04G101900.1 Ceric.04G101900 not classified & original description: pacid=50631891... 0.03 OrthoFinder output from all 47 species
Ceric.11G018300.1 Ceric.11G018300 not classified & original description: pacid=50595329... 0.05 OrthoFinder output from all 47 species
Ceric.14G035300.1 Ceric.14G035300 not classified & original description: pacid=50633681... 0.06 OrthoFinder output from all 47 species
Ceric.35G046700.1 Ceric.35G046700 not classified & original description: pacid=50581722... 0.07 OrthoFinder output from all 47 species
Dcu_g13404 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g48279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019785001 No alias Remorin OS=Solanum tuberosum 0.03 OrthoFinder output from all 47 species
Len_g05082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08631 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g57392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38113 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g00941 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09048 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005937 No alias not classified & original description: CDS=1-372 0.04 OrthoFinder output from all 47 species
Smo428235 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc05g048820.3.1 Solyc05g048820 Remorin OS=Solanum tuberosum (sp|p93788|remo_soltu : 94.0) 0.02 OrthoFinder output from all 47 species
Solyc06g035900.1.1 Solyc06g035900 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g03405 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005516 Remorin_C 122 221
No external refs found!