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  5. Nbi_g00675

Nbi_g00675


Description : component *(uL10c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0005040 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g00675
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00218670 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
AT5G13510 No alias Ribosomal protein L10 family protein 0.16 OrthoFinder output from all 47 species
Adi_g039494 No alias component *(uL10) of organelle large ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g04789 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Als_g52226 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g05054 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Aspi01Gene09795.t1 Aspi01Gene09795 component *(uL10c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aspi01Gene48059.t1 Aspi01Gene48059 component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g27816 No alias component *(uL10) of organelle large ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.20G078900.1 Ceric.20G078900 component *(uL10c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020516.18 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Cre06.g272850 No alias Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
Dac_g03164 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Dcu_g03520 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Dde_g19314 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01032650001 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Gb_21730 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.09 OrthoFinder output from all 47 species
LOC_Os03g17580.1 LOC_Os03g17580 component mtRPL10|psRPL10 of large ribosomal subunit... 0.09 OrthoFinder output from all 47 species
Len_g13372 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Lfl_g00434 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_483364g0010 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.03 OrthoFinder output from all 47 species
Mp4g07300.1 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.15 OrthoFinder output from all 47 species
Msp_g00974 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g30194 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g32458 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g11548 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pp3c1_1330V3.1 Pp3c1_1330 Ribosomal protein L10 family protein 0.07 OrthoFinder output from all 47 species
Ppi_g54796 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008577 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Smo233811 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Solyc04g009540.1.1 Solyc04g009540 component mtRPL10|psRPL10 of large ribosomal subunit... 0.06 OrthoFinder output from all 47 species
Spa_g24954 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Tin_g00512 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e001284_P001 Zm00001e001284 component mtRPL10|psRPL10 of large ribosomal subunit... 0.08 OrthoFinder output from all 47 species
Zm00001e038440_P001 Zm00001e038440 component mtRPL10|psRPL10 of large ribosomal subunit... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 62 145
No external refs found!