1. Home
  2. Species
  3. Nephrolepis biserrata
  4. Sequence
  5. Nbi_g01805

Nbi_g01805


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g01805
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
Adi_g001121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07025 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aev_g07107 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species
Ala_g14907 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Als_g01479 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g37509 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Als_g43713 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Als_g47204 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Aob_g35125 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Aop_g06045 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Aspi01Gene64156.t1 Aspi01Gene64156 deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene68835.t1 Aspi01Gene68835 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene71512.t1 Aspi01Gene71512 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G056100.1 Ceric.05G056100 deadenylase component *(CAF1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Ceric.20G029700.1 Ceric.20G029700 deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Cre03.g157300 No alias Probable CCR4-associated factor 1 homolog 7... 0.01 OrthoFinder output from all 47 species
Dac_g02678 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.11 OrthoFinder output from all 47 species
Dcu_g01208 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Dde_g02762 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ehy_g00624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g00957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
LOC_Os09g24990.2 LOC_Os09g24990 Probable CCR4-associated factor 1 homolog 7... 0.03 OrthoFinder output from all 47 species
Len_g11620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17479 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Len_g20084 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Lfl_g00761 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Lfl_g03678 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g24939 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g09969 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species
Ore_g08887 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Ore_g27312 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Pir_g11620 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021677 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Smo444748 No alias Probable CCR4-associated factor 1 homolog 6... 0.03 OrthoFinder output from all 47 species
Solyc03g117030.2.1 Solyc03g117030 Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
Solyc11g045130.2.1 Solyc11g045130 Probable CCR4-associated factor 1 homolog 7... 0.03 OrthoFinder output from all 47 species
Spa_g06339 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species
Tin_g02569 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 15 137
No external refs found!