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  5. Nbi_g02436

Nbi_g02436 (ATHAM3, HAM3, LOM3)


Aliases : ATHAM3, HAM3, LOM3

Description : GRAS-type transcription factor & original description: none


Gene families : OG0002830 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g02436
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AT2G45160 ATHAM1, HAM1, LOM1 GRAS family transcription factor 0.04 OrthoFinder output from all 47 species
AT4G00150 ATHAM3, HAM3, LOM3 GRAS family transcription factor 0.03 OrthoFinder output from all 47 species
Adi_g110644 No alias GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.08G011800.1 HAM2, LOM2,... GRAS-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ehy_g02718 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03844 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027680001 ATHAM3, HAM3, LOM3 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
Pir_g24139 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g44382 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g090950.4.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Solyc08g078800.1.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Spa_g23136 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000305_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Zm00001e002296_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Zm00001e007302_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Zm00001e015355_P002 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e036709_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e041505_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 602 970
No external refs found!