Nbi_g02482 (ATCHR12)

Aliases : ATCHR12

Description : SMARCA component *(SYD/BRM/MINU) & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g02482
Cluster	HCCA: Cluster_129

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011533	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g011986	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Adi_g061147	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Adi_g093200	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0435.g069908	CHR11	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Len_g11421	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g27055	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR029295	SnAC	1138	1203
IPR001650	Helicase_C	934	1047
IPR000330	SNF2_N	625	913

External Links

No external refs found!