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  5. Nbi_g03642

Nbi_g03642


Description : not classified & original description: none


Gene families : OG0000642 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000642_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03642

Target Alias Description ECC score Gene Family Method Actions
AT5G16840 BPA1 binding partner of acd11 1 0.02 OrthoFinder output from all 47 species
Adi_g022185 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g115931 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g14819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11474 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g19115 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g21309 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g37925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03086 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009796 No alias not classified & original description: CDS=86-811 0.03 OrthoFinder output from all 47 species
Azfi_s0130.g049026 No alias not classified & original description: CDS=251-1009 0.04 OrthoFinder output from all 47 species
Cba_g14713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G062300.1 Ceric.05G062300 not classified & original description: pacid=50578128... 0.06 OrthoFinder output from all 47 species
Ceric.28G042200.1 Ceric.28G042200 not classified & original description: pacid=50570559... 0.04 OrthoFinder output from all 47 species
Dac_g13809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07449 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g23747 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Ehy_g02086 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04385 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g19804 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01011624001 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01020030001 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01022464001 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g50560.1 LOC_Os03g50560 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os03g53770.1 LOC_Os03g53770 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g54870.1 LOC_Os04g54870 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Len_g55926 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp3g08610.1 No alias Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g36361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30567 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018884 No alias not classified & original description: CDS=125-916 0.02 OrthoFinder output from all 47 species
Sam_g07450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07486 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g11660 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc08g076530.3.1 Solyc08g076530 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g00916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g04495 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g38160 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g05834 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005469_P003 Zm00001e005469 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e012039_P002 Zm00001e012039 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e036683_P001 Zm00001e036683 Binding partner of ACD11 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 67
No external refs found!