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  5. Nbi_g03876

Nbi_g03876 (HAF01, HAC13, TAF1, HAF1, GTD1)


Aliases : HAF01, HAC13, TAF1, HAF1, GTD1

Description : component *(HAF/TAF1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0003088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03876

Target Alias Description ECC score Gene Family Method Actions
Cba_g11487 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ehy_g29129 HAF01, HAC13,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55054 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
InterPro domains Description Start Stop
IPR009067 TAF_II_230-bd 14 57
IPR001487 Bromodomain 1804 1876
IPR000626 Ubiquitin-like_dom 677 744
IPR022591 TAF1_HAT_dom 588 1160
No external refs found!