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Nbi_g04438 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g04438

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00065720 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Ala_g20864 PUM7, APUM7 not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01038732001 APUM8, PUM8 Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Lfl_g17762 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016995 APUM12, PUM12 not classified & original description: CDS=243-2819 0.01 OrthoFinder output from all 47 species
Spa_g55660 PUM7, APUM7 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019781 NEDD8 activating enzyme activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045116 protein neddylation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 569 602
IPR001313 Pumilio_RNA-bd_rpt 753 786
IPR001313 Pumilio_RNA-bd_rpt 796 823
IPR001313 Pumilio_RNA-bd_rpt 645 675
IPR001313 Pumilio_RNA-bd_rpt 533 566
IPR001313 Pumilio_RNA-bd_rpt 610 639
IPR001313 Pumilio_RNA-bd_rpt 718 736
IPR001313 Pumilio_RNA-bd_rpt 680 713
IPR000571 Znf_CCCH 406 427
No external refs found!