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  5. Nbi_g04463

Nbi_g04463


Description : component *(SF3B1) of splicing factor 3B complex & original description: none


Gene families : OG0002634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g04463

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00094580 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
AT5G64270 No alias splicing factor, putative 0.06 OrthoFinder output from all 47 species
Adi_g104747 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Ala_g02669 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Als_g10272 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Aob_g02393 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Aop_g36775 No alias component *(SF3B1) of splicing factor 3B complex &... 0.07 OrthoFinder output from all 47 species
Cba_g25739 No alias component *(SF3B1) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Ceric.02G008400.1 Ceric.02G008400 component *(SF3B1) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.41 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre12.g494100 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Ehy_g02942 No alias component *(SF3B1) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
GSVIVT01025852001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.12 OrthoFinder output from all 47 species
Gb_14294 No alias component SF3B1 of splicing factor 3B complex 0.08 OrthoFinder output from all 47 species
Gb_20157 No alias component SF3B1 of splicing factor 3B complex 0.1 OrthoFinder output from all 47 species
LOC_Os02g05310.4 LOC_Os02g05310 component SF3B1 of splicing factor 3B complex 0.08 OrthoFinder output from all 47 species
MA_11685g0010 No alias component SF3B1 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Mp5g19650.1 No alias component SF3B1 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
Msp_g11331 No alias component *(SF3B1) of splicing factor 3B complex &... 0.07 OrthoFinder output from all 47 species
Ore_g05022 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Pir_g13624 No alias component *(SF3B1) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003182 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Sam_g25156 No alias component *(SF3B1) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Smo97336 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Spa_g30068 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Tin_g02906 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e025224_P001 Zm00001e025224 component SF3B1 of splicing factor 3B complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR015016 SF3b_su1 280 410
No external refs found!