Nbi_g04802 (PUB25)

Aliases : PUB25

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04802

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00130440	CMPG2, ATCMPG2,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
AT3G02840	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G19380	PUB25	plant U-box 25	0.04	OrthoFinder output from all 47 species
AT5G64660	CMPG2, ATCMPG2	CYS, MET, PRO, and GLY protein 2	0.03	OrthoFinder output from all 47 species
Aev_g18167	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g20058	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g12714	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g12715	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g19134	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15171.t1	PUB29, ATPUB29,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15674.t1	PUB26, Aspi01Gene15674	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene18452.t1	PUB25, Aspi01Gene18452	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene18453.t1	PUB25, Aspi01Gene18453	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene35689.t1	PUB25, Aspi01Gene35689	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g10795	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03660	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_19502	PUB23	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os02g34410.1	PUB25, LOC_Os02g34410	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os03g13740.1	LOC_Os03g13740	U-box domain-containing protein 20 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os04g34030.1	PUB23, LOC_Os04g34030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os04g58920.1	PUB23, LOC_Os04g58920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Lfl_g22781	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Mp3g01700.1	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp7g11000.1	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Nbi_g06628	PUB25	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g44415	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717	PUB26	not classified & original description: CDS=1-1404	0.04	OrthoFinder output from all 47 species
Solyc01g009330.1.1	PUB22, Solyc01g009330	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc04g071030.1.1	Solyc04g071030	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Solyc11g068940.1.1	PUB24, Solyc11g068940	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e022698_P001	PUB26, Zm00001e022698	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	5	76

External Links

No external refs found!

Nbi_g04802 (PUB25)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation