Nbi_g05141

Description : component *(bL17c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0002243 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002243_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g05141
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AT3G54210	No alias	Ribosomal protein L17 family protein	0.08	OrthoFinder output from all 47 species
Ala_g36982	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g08091	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g32904	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0132.g049286	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000889.52	No alias	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
Cre02.g108850	No alias	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Dac_g01223	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g23921	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g06743	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Gb_36007	No alias	component psRPL17 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os03g60100.1	LOC_Os03g60100	component psRPL17 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Lfl_g00441	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
MA_263166g0010	No alias	50S ribosomal protein L17, chloroplastic OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp8g05860.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Msp_g20377	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ore_g31023	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g36278	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c12_10340V3.1	Pp3c12_10340	Ribosomal protein L17 family protein	0.04	OrthoFinder output from all 47 species
Pp3c13_21730V3.1	Pp3c13_21730	Ribosomal protein L17 family protein	0.02	OrthoFinder output from all 47 species
Pp3c3_12090V3.1	Pp3c3_12090	Ribosomal protein L17 family protein	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g015014	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g11817	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Solyc06g082750.3.1	Solyc06g082750	component psRPL17 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Solyc06g082760.4.1	Solyc06g082760	component psRPL17 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Spa_g04290	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Spa_g04291	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Spa_g23642	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g03061	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e011784_P001	Zm00001e011784	component psRPL17 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000456	Ribosomal_L17	94	190

External Links

No external refs found!

Nbi_g05141

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation