Nbi_g05258


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00243230 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00088p00046850 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Ala_g06818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13671 DOT4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g21902 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g25155 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25755 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g26367 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36540 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38429 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g38788 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28486 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g67885 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.05 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.06 OrthoFinder output from all 47 species
Ceric.04G036800.1 Ceric.04G036800 not classified & original description: pacid=50632550... 0.02 OrthoFinder output from all 47 species
Ceric.20G040700.1 Ceric.20G040700 not classified & original description: pacid=50566494... 0.03 OrthoFinder output from all 47 species
Ceric.22G078800.1 Ceric.22G078800 not classified & original description: pacid=50613807... 0.03 OrthoFinder output from all 47 species
Ceric.23G059700.1 CRR22, Ceric.23G059700 not classified & original description: pacid=50609689... 0.03 OrthoFinder output from all 47 species
Ceric.26G035200.1 Ceric.26G035200 not classified & original description: pacid=50599772... 0.03 OrthoFinder output from all 47 species
Ceric.27G018200.1 Ceric.27G018200 not classified & original description: pacid=50604999... 0.05 OrthoFinder output from all 47 species
Ceric.32G058000.1 Ceric.32G058000 not classified & original description: pacid=50598467... 0.03 OrthoFinder output from all 47 species
Dac_g15344 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30157 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07737 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08184 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08279 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10377 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21497 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47892 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g49092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03975 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16911 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g19384 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28232 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46524 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g50301 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51266 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01031251001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
LOC_Os01g28570.1 LOC_Os01g28570 Pentatricopeptide repeat-containing protein At3g49710... 0.04 OrthoFinder output from all 47 species
LOC_Os04g39410.1 OTP86, LOC_Os04g39410 RNA editing factor (OTP86) 0.04 OrthoFinder output from all 47 species
LOC_Os08g13990.1 LOC_Os08g13990 Pentatricopeptide repeat-containing protein At2g37320... 0.04 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.03 OrthoFinder output from all 47 species
Len_g18577 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g27339 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g31186 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33085 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g38488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56481 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g07821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g15182 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g05274 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42868 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g24038 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g03043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29175 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35928 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57980 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63646 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63872 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.02 OrthoFinder output from all 47 species
Ppi_g01154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04704 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g14452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015555 No alias not classified & original description: CDS=1-2496 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018323 No alias not classified & original description: CDS=1-1728 0.02 OrthoFinder output from all 47 species
Sam_g11237 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28579 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g33428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g096680.1.1 REME1, Solyc12g096680 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Spa_g14314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25375 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g29172 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g54669 MEF9 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06527 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17792 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26871 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g29153 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 123 171
IPR002885 Pentatricopeptide_repeat 22 68
IPR002885 Pentatricopeptide_repeat 198 220
No external refs found!