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  5. Nbi_g05790

Nbi_g05790


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05790

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g005699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g34058 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g10890 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g19875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G024000.1 EMB2261, Ceric.09G024000 not classified & original description: pacid=50587738... 0.05 OrthoFinder output from all 47 species
Dac_g30491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g31026 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39512 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03959 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
GSVIVT01015233001 EMB2261 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os04g33840.1 LOC_Os04g33840 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g05041 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Msp_g08181 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g30376 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g34031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34234 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41336 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44401 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g46092 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g03644 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34280 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g35704 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g16101 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30107 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18927 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32617 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g15980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo97289 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc07g005850.3.1 Solyc07g005850 Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
Tin_g05666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05998 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09800 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g20127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20839 LOI1, MEF11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26884 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g27069 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 254 276
IPR002885 Pentatricopeptide_repeat 356 379
IPR002885 Pentatricopeptide_repeat 559 582
IPR002885 Pentatricopeptide_repeat 50 72
IPR002885 Pentatricopeptide_repeat 149 174
IPR002885 Pentatricopeptide_repeat 76 123
IPR002885 Pentatricopeptide_repeat 178 225
IPR002885 Pentatricopeptide_repeat 483 531
IPR002885 Pentatricopeptide_repeat 382 428
IPR002885 Pentatricopeptide_repeat 279 326
No external refs found!