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  5. Nbi_g05851

Nbi_g05851


Description : TCP-type transcription factor & original description: none


Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g05851

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00040760 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.morning element... 0.03 OrthoFinder output from all 47 species
AT5G08330 No alias TCP family transcription factor 0.03 OrthoFinder output from all 47 species
AT5G23280 No alias TCP family transcription factor 0.04 OrthoFinder output from all 47 species
Adi_g088074 No alias TCP-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g108415 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06733 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33212 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010337 AtTCP14, TCP14 TCP-type transcription factor & original description: CDS=1-2394 0.05 OrthoFinder output from all 47 species
Azfi_s0013.g013244 No alias TCP-type transcription factor & original description: CDS=1-1674 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042743 AtTCP14, TCP14 TCP-type transcription factor & original description: CDS=1-1476 0.04 OrthoFinder output from all 47 species
Cba_g16797 AT-TCP20, TCP20,... circadian clock activation factor *(TCP20) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g26686 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008023001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
GSVIVT01023283001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.05 OrthoFinder output from all 47 species
LOC_Os02g42380.1 LOC_Os02g42380 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os08g43160.1 LOC_Os08g43160 transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
LOC_Os11g07460.1 LOC_Os11g07460 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
LOC_Os12g07480.1 LOC_Os12g07480 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Len_g02396 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_16752g0010 No alias transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
MA_635g0010 AtTCP14, TCP14 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
MA_81710g0010 No alias transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Mp7g09490.1 No alias transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Nbi_g24235 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25570 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25887 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25970 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00471 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016510 No alias TCP-type transcription factor & original description: CDS=1-2211 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0175.g024570 No alias TCP-type transcription factor & original description: CDS=1-1014 0.04 OrthoFinder output from all 47 species
Smo441321 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Solyc03g006800.1.1 Solyc03g006800 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc06g070900.3.1 AtTCP14, TCP14,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc08g080150.1.1 Solyc08g080150 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e015209_P001 Zm00001e015209 transcription factor (TCP). CHE circadian clock repression factor 0.05 OrthoFinder output from all 47 species
Zm00001e023897_P001 Zm00001e023897 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e028426_P001 AT-TCP20, TCP20,... transcription factor (TCP). TCP20 circadian clock... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 163 265
No external refs found!