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  5. Nbi_g06282

Nbi_g06282 (MEF22)


Aliases : MEF22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06282

Target Alias Description ECC score Gene Family Method Actions
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g072273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34817 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30811 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55319 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene72589.t1 MEF22, Aspi01Gene72589 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0059.g034666 No alias not classified & original description: CDS=1-1770 0.04 OrthoFinder output from all 47 species
Azfi_s0093.g043216 CRR22 not classified & original description: CDS=139-1788 0.03 OrthoFinder output from all 47 species
Azfi_s0201.g057560 No alias not classified & original description: CDS=1-2682 0.04 OrthoFinder output from all 47 species
Azfi_s0245.g060017 No alias not classified & original description: CDS=1-2076 0.02 OrthoFinder output from all 47 species
Azfi_s0292.g063377 OTP86 not classified & original description: CDS=1-2337 0.02 OrthoFinder output from all 47 species
Azfi_s0896.g091565 No alias not classified & original description: CDS=1-2586 0.03 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.02 OrthoFinder output from all 47 species
Cba_g05443 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14131 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16998 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19562 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34897 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g57497 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G015100.1 Ceric.04G015100 not classified & original description: pacid=50632156... 0.03 OrthoFinder output from all 47 species
Ceric.10G022300.1 Ceric.10G022300 not classified & original description: pacid=50612428... 0.03 OrthoFinder output from all 47 species
Ceric.12G030100.1 Ceric.12G030100 not classified & original description: pacid=50600629... 0.03 OrthoFinder output from all 47 species
Ceric.14G063300.1 Ceric.14G063300 not classified & original description: pacid=50633241... 0.03 OrthoFinder output from all 47 species
Ceric.28G018400.1 Ceric.28G018400 not classified & original description: pacid=50571000... 0.04 OrthoFinder output from all 47 species
Dac_g16073 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15722 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17642 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12053 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18910 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20638 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Len_g19012 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g25855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436932g0010 No alias ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18756 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g47021 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12264 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33539 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011714 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2064 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014767 OTP84 not classified & original description: CDS=399-2006 0.03 OrthoFinder output from all 47 species
Sam_g05209 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52122 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.02 OrthoFinder output from all 47 species
Solyc09g009950.4.1 Solyc09g009950 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
Spa_g05643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10760 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22619 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30232 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 426 471
IPR002885 Pentatricopeptide_repeat 322 369
IPR002885 Pentatricopeptide_repeat 252 291
IPR032867 DYW_dom 645 723
IPR002885 Pentatricopeptide_repeat 152 175
IPR002885 Pentatricopeptide_repeat 395 425
IPR002885 Pentatricopeptide_repeat 499 522
IPR046848 E_motif 541 603
IPR046849 Eplus_motif 608 632
No external refs found!