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  5. Nbi_g06323

Nbi_g06323


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06323

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.03 OrthoFinder output from all 47 species
AMTR_s00041p00129840 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.04 OrthoFinder output from all 47 species
Adi_g005447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016095 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g025688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099272 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101185 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31168 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g34224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36018 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36536 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54909 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08304 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g19301 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20429 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene02996.t1 CRR2, Aspi01Gene02996 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33810.t1 Aspi01Gene33810 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0027.g023748 CRR22 not classified & original description: CDS=1-2115 0.03 OrthoFinder output from all 47 species
Azfi_s0268.g061096 No alias not classified & original description: CDS=119-2467 0.03 OrthoFinder output from all 47 species
Cba_g26721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g54717 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07981 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g11455 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21496 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26044 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50137 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g01560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05392 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16644 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16747 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22016 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46522 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49689 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000719001 OSB1 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
Len_g10511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g32892 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g44704 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g54496 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_6511g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Msp_g14913 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g16104 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28534 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g13293 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18671 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60793 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63120 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g63873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04494 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g16161 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c6_28980V3.1 Pp3c6_28980 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g32232 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g54934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001030 No alias not classified & original description: CDS=1-1857 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006762 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0252.g026781 No alias not classified & original description: CDS=1-2700 0.02 OrthoFinder output from all 47 species
Smo72131 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Spa_g27883 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Zm00001e020442_P001 Zm00001e020442 Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
Zm00001e028330_P001 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 496 519
IPR002885 Pentatricopeptide_repeat 802 820
IPR002885 Pentatricopeptide_repeat 292 315
IPR002885 Pentatricopeptide_repeat 700 724
IPR002885 Pentatricopeptide_repeat 624 670
IPR002885 Pentatricopeptide_repeat 521 569
IPR002885 Pentatricopeptide_repeat 420 466
IPR002885 Pentatricopeptide_repeat 319 366
IPR002885 Pentatricopeptide_repeat 217 263
IPR002885 Pentatricopeptide_repeat 725 772
IPR002885 Pentatricopeptide_repeat 115 161
No external refs found!