Nbi_g06328


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06328
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT4G14820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G20010 PTAC9, OSB2 plastid transcriptionally active 9 0.03 OrthoFinder output from all 47 species
Adi_g082266 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101343 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12481 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33318 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06136 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05192 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13395 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16183 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21473 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23997 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67654 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene21870.t1 EMB2758, Aspi01Gene21870 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31776.t1 Aspi01Gene31776 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49892.t2 Aspi01Gene49892 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008050 No alias not classified & original description: CDS=1-3306 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023505 No alias not classified & original description: CDS=32-2620 0.04 OrthoFinder output from all 47 species
Azfi_s0043.g026960 No alias not classified & original description: CDS=1-4971 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033714 CRR22 not classified & original description: CDS=1-1803 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037188 CRR22 not classified & original description: CDS=1-1875 0.04 OrthoFinder output from all 47 species
Azfi_s0094.g043491 No alias not classified & original description: CDS=1-2859 0.04 OrthoFinder output from all 47 species
Azfi_s0213.g058286 No alias not classified & original description: CDS=1-3009 0.04 OrthoFinder output from all 47 species
Azfi_s0474.g072983 No alias not classified & original description: CDS=1-2562 0.04 OrthoFinder output from all 47 species
Cba_g05315 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20235 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30008 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G028700.1 Ceric.07G028700 not classified & original description: pacid=50626039... 0.03 OrthoFinder output from all 47 species
Ceric.07G030200.1 Ceric.07G030200 not classified & original description: pacid=50627452... 0.04 OrthoFinder output from all 47 species
Ceric.07G035900.1 Ceric.07G035900 not classified & original description: pacid=50625961... 0.04 OrthoFinder output from all 47 species
Ceric.07G067800.1 Ceric.07G067800 not classified & original description: pacid=50627089... 0.06 OrthoFinder output from all 47 species
Ceric.09G023800.1 Ceric.09G023800 not classified & original description: pacid=50587607... 0.04 OrthoFinder output from all 47 species
Ceric.09G065700.1 Ceric.09G065700 not classified & original description: pacid=50586915... 0.04 OrthoFinder output from all 47 species
Ceric.10G001600.1 EMB2758, Ceric.10G001600 not classified & original description: pacid=50613605... 0.04 OrthoFinder output from all 47 species
Ceric.12G097500.1 Ceric.12G097500 not classified & original description: pacid=50601961... 0.04 OrthoFinder output from all 47 species
Ceric.13G015700.1 Ceric.13G015700 not classified & original description: pacid=50636078... 0.03 OrthoFinder output from all 47 species
Ceric.14G027100.1 Ceric.14G027100 not classified & original description: pacid=50633502... 0.05 OrthoFinder output from all 47 species
Ceric.1Z048400.1 Ceric.1Z048400 not classified & original description: pacid=50571131... 0.04 OrthoFinder output from all 47 species
Ceric.1Z063900.1 CRR22, Ceric.1Z063900 not classified & original description: pacid=50615473... 0.04 OrthoFinder output from all 47 species
Ceric.26G057900.1 CRR22, Ceric.26G057900 not classified & original description: pacid=50598962... 0.04 OrthoFinder output from all 47 species
Ceric.27G064200.1 Ceric.27G064200 not classified & original description: pacid=50604994... 0.04 OrthoFinder output from all 47 species
Ceric.27G064300.1 Ceric.27G064300 not classified & original description: pacid=50606133... 0.03 OrthoFinder output from all 47 species
Ceric.28G027200.1 DOT4, Ceric.28G027200 not classified & original description: pacid=50570918... 0.04 OrthoFinder output from all 47 species
Ceric.28G059900.1 Ceric.28G059900 not classified & original description: pacid=50569765... 0.04 OrthoFinder output from all 47 species
Ceric.29G017400.1 Ceric.29G017400 not classified & original description: pacid=50625928... 0.04 OrthoFinder output from all 47 species
Ceric.29G051600.1 Ceric.29G051600 not classified & original description: pacid=50625199... 0.04 OrthoFinder output from all 47 species
Ceric.35G003800.1 Ceric.35G003800 not classified & original description: pacid=50581275... 0.03 OrthoFinder output from all 47 species
Ceric.38G032700.1 Ceric.38G032700 not classified & original description: pacid=50579462... 0.04 OrthoFinder output from all 47 species
Dcu_g06429 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03997 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09596 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10498 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11227 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g12171 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g13442 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16100 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g16483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16747 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g17562 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g18063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18127 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19140 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22169 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22176 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22330 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g22604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22659 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23215 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23534 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23579 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g23602 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26478 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26709 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28701 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g28915 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g36038 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36054 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36066 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g36355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g41188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g41966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g43777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49915 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20660 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007972001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
GSVIVT01009574001 OSB1 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Len_g18978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22834 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20489 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g03088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07329 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g10933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12216 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13599 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16554 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g51106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57079 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57327 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63498 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09254 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15720 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g32959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39076 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53025 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56598 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002155 CRR22 not classified & original description: CDS=84-2588 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005912 No alias not classified & original description: CDS=1-3210 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011851 OTP84 not classified & original description: CDS=1-2175 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g017989 No alias not classified & original description: CDS=1-1851 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0214.g026000 No alias not classified & original description: CDS=66-1799 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026331 No alias not classified & original description: CDS=1-2598 0.04 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g02061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g02212 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08732 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12227 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14020 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15468 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20091 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21372 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23977 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g24109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26143 MEF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47251 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g52496 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55598 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57126 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04113 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06539 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09800 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11856 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11929 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19923 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g24133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24828 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g28457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30253 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44607 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e007597_P001 Zm00001e007597 Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
Zm00001e011875_P001 OTP85, Zm00001e011875 RNA editing factor (OTP85) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 359 381
IPR002885 Pentatricopeptide_repeat 155 178
IPR002885 Pentatricopeptide_repeat 387 417
IPR002885 Pentatricopeptide_repeat 487 533
IPR002885 Pentatricopeptide_repeat 589 635
IPR002885 Pentatricopeptide_repeat 282 329
IPR002885 Pentatricopeptide_repeat 78 126
IPR002885 Pentatricopeptide_repeat 181 227
No external refs found!