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  5. Nbi_g06887

Nbi_g06887 (EMB2758)


Aliases : EMB2758

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g06887

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00220350 OTP85,... Pentatricopeptide repeat-containing protein At2g02980,... 0.03 OrthoFinder output from all 47 species
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g008014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015988 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g017104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021050 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g076358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087163 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g096783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26367 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36510 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05719 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19281 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g29210 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33454 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g43028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68468 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene40497.t1 CRR2, Aspi01Gene40497 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene66046.t1 Aspi01Gene66046 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009910 EMB2758 not classified & original description: CDS=1-1803 0.04 OrthoFinder output from all 47 species
Azfi_s0216.g058493 No alias not classified & original description: CDS=1-2574 0.02 OrthoFinder output from all 47 species
Azfi_s0229.g059121 CRR22 not classified & original description: CDS=1-2070 0.03 OrthoFinder output from all 47 species
Azfi_s0309.g064088 No alias not classified & original description: CDS=1-441 0.03 OrthoFinder output from all 47 species
Azfi_s0908.g092256 No alias not classified & original description: CDS=1-621 0.04 OrthoFinder output from all 47 species
Azfi_s1707.g105997 No alias not classified & original description: CDS=1-2574 0.02 OrthoFinder output from all 47 species
Cba_g02672 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20250 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g20878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G084700.1 VAC1, ECB2,... not classified & original description: pacid=50592179... 0.03 OrthoFinder output from all 47 species
Ceric.04G036800.1 Ceric.04G036800 not classified & original description: pacid=50632550... 0.03 OrthoFinder output from all 47 species
Ceric.22G050700.1 Ceric.22G050700 not classified & original description: pacid=50614024... 0.03 OrthoFinder output from all 47 species
Ceric.27G011400.1 Ceric.27G011400 not classified & original description: pacid=50605728... 0.03 OrthoFinder output from all 47 species
Ceric.31G020200.1 Ceric.31G020200 not classified & original description: pacid=50574865... 0.04 OrthoFinder output from all 47 species
Ceric.31G026600.1 CRR22, Ceric.31G026600 not classified & original description: pacid=50574263... 0.04 OrthoFinder output from all 47 species
Ceric.32G058000.1 Ceric.32G058000 not classified & original description: pacid=50598467... 0.02 OrthoFinder output from all 47 species
Ceric.33G050800.1 CRR22, Ceric.33G050800 not classified & original description: pacid=50606654... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g06366 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08876 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17299 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g22451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35962 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g37149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38425 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50115 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g51775 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23030 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000719001 OSB1 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 OrthoFinder output from all 47 species
Gb_32439 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
LOC_Os01g45840.1 LOC_Os01g45840 Pentatricopeptide repeat-containing protein At2g36730... 0.03 OrthoFinder output from all 47 species
LOC_Os03g59264.1 LOC_Os03g59264 lectin chaperone (CRT) 0.03 OrthoFinder output from all 47 species
Len_g03400 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07979 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18592 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28860 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06713 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06743 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07032 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07038 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07063 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07840 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g08720 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09843 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11306 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Nbi_g23524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26690 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45078 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g03089 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57161 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23584 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18869 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43481 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49012 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g54934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002209 No alias not classified & original description: CDS=347-2416 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004577 No alias not classified & original description: CDS=1-1743 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005856 No alias not classified & original description: CDS=1-2292 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007537 No alias not classified & original description: CDS=117-2237 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007679 OTP86 not classified & original description: CDS=1-4497 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015808 No alias EC_2.5 transferase transferring alkyl or aryl group,... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018780 No alias not classified & original description: CDS=1-2574 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022950 EMB2261 not classified & original description: CDS=1-2124 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022971 No alias not classified & original description: CDS=343-1173 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023175 No alias not classified & original description: CDS=1-2640 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023739 No alias not classified & original description: CDS=1-3168 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025568 No alias not classified & original description: CDS=1-2793 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0262.g026911 REME1 not classified & original description: CDS=1-1512 0.04 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35116 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo85415 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
Solyc02g081900.4.1 OTP84, Solyc02g081900 RNA editing factor (OTP84) 0.02 OrthoFinder output from all 47 species
Solyc04g076800.3.1 CRR22, Solyc04g076800 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Solyc08g013850.1.1 CRR21, Solyc08g013850 RNA editing factor (CRR21) 0.04 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.04 OrthoFinder output from all 47 species
Spa_g09924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18869 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44229 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e016281_P001 LPA66, Zm00001e016281 Pentatricopeptide repeat-containing protein At3g62890... 0.02 OrthoFinder output from all 47 species
Zm00001e023498_P001 VAC1, ECB2,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 462 483
IPR002885 Pentatricopeptide_repeat 389 417
IPR002885 Pentatricopeptide_repeat 273 300
IPR002885 Pentatricopeptide_repeat 175 203
IPR032867 DYW_dom 803 892
IPR002885 Pentatricopeptide_repeat 490 536
IPR002885 Pentatricopeptide_repeat 589 636
No external refs found!