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  5. Nbi_g07458

Nbi_g07458


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g07458
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00116p00025230 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G07420 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G18990 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g10719 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10720 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g12748 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18531 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19093 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g20976 QRT1 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16581 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04970 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07992 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g14528 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16751 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20021 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g21373 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g22415 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g56742 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene05718.t1 Aspi01Gene05718 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10492.t1 Aspi01Gene10492 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20189.t1 Aspi01Gene20189 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30603.t1 Aspi01Gene30603 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene34270.t1 Aspi01Gene34270 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59341.t1 Aspi01Gene59341 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59345.t1 Aspi01Gene59345 pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene59347.t1 Aspi01Gene59347 pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene59354.t1 Aspi01Gene59354 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63093.t1 Aspi01Gene63093 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70538.t1 Aspi01Gene70538 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008437 No alias pectin methylesterase & original description: CDS=79-1257 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026612 No alias pectin methylesterase & original description: CDS=139-1269 0.04 OrthoFinder output from all 47 species
Azfi_s0055.g033955 No alias pectin methylesterase & original description: CDS=387-1493 0.03 OrthoFinder output from all 47 species
Azfi_s0516.g074982 No alias not classified & original description: CDS=1-498 0.04 OrthoFinder output from all 47 species
Azfi_s0648.g080905 No alias pectin methylesterase & original description: CDS=1-489 0.04 OrthoFinder output from all 47 species
Cba_g03729 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G008900.1 Ceric.03G008900 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.05G031400.1 Ceric.05G031400 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.10G069000.1 Ceric.10G069000 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g00830 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dac_g17627 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20667 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11729 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17111 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01023786001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Gb_23209 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Len_g13333 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
MA_112715g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_181657g0020 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp2g01420.1 No alias pectin methylesterase 0.05 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Nbi_g30255 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05557 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27386 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31394 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02205 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14779 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004950 No alias pectin methylesterase & original description: CDS=716-1846 0.02 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 OrthoFinder output from all 47 species
Solyc12g098340.2.1 Solyc12g098340 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Spa_g03685 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10100 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29457 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g40908 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g43332 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49902 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g50750 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54581 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g54582 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19866 No alias pecTin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 89 375
No external refs found!