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  5. Nbi_g08164

Nbi_g08164


Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none


Gene families : OG0004431 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004431_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08164

Target Alias Description ECC score Gene Family Method Actions
Aev_g06133 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.25 No alias Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Len_g12220 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Tin_g12163 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e038714_P001 Zm00001e038714 methionine-tRNA ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002547 tRNA-bd_dom 643 738
IPR015413 Methionyl/Leucyl_tRNA_Synth 16 407
IPR041872 Anticodon_Met 434 583
No external refs found!