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  5. Nbi_g09711

Nbi_g09711 (CRR22)


Aliases : CRR22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g09711

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.04 OrthoFinder output from all 47 species
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16531 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g36539 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g02869 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04156 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g16489 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16781 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g008050 No alias not classified & original description: CDS=1-3306 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g008952 No alias not classified & original description: CDS=1-2550 0.06 OrthoFinder output from all 47 species
Azfi_s0008.g011478 No alias not classified & original description: CDS=1-2919 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048736 No alias not classified & original description: CDS=1-3153 0.03 OrthoFinder output from all 47 species
Cba_g30013 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g37017 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G008900.1 Ceric.14G008900 not classified & original description: pacid=50634493... 0.04 OrthoFinder output from all 47 species
Ceric.31G032400.1 CRR22, Ceric.31G032400 not classified & original description: pacid=50574168... 0.03 OrthoFinder output from all 47 species
Ceric.38G032900.1 CRR22, Ceric.38G032900 not classified & original description: pacid=50580371... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre12.g483720 No alias Cell cycle.organelle machineries.DNA... 0.01 OrthoFinder output from all 47 species
Dac_g30248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43262 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07340 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g14112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g36368 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os01g62910.1 CRR2, LOC_Os01g62910 Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g04390.1 LOC_Os03g04390 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.04 OrthoFinder output from all 47 species
LOC_Os04g02850.1 OTP84, LOC_Os04g02850 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
Len_g18528 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34455 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g16442 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22943 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27693 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49408 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007853 No alias not classified & original description: CDS=1-1137 0.04 OrthoFinder output from all 47 species
Sam_g33428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo102603 CRR2 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Smo118770 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.05 OrthoFinder output from all 47 species
Smo127736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Smo78092 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Smo84108 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Smo97289 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Smo99647 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 OrthoFinder output from all 47 species
Solyc01g095690.2.1 Solyc01g095690 Pentatricopeptide repeat-containing protein At4g01030,... 0.03 OrthoFinder output from all 47 species
Spa_g50618 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17315 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g22636 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e016923_P001 CRR2, Zm00001e016923 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004359 glutaminase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042816 vitamin B6 metabolic process IEP HCCA
BP GO:0042819 vitamin B6 biosynthetic process IEP HCCA
BP GO:0042822 pyridoxal phosphate metabolic process IEP HCCA
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046184 aldehyde biosynthetic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 797 873
IPR002885 Pentatricopeptide_repeat 368 415
IPR002885 Pentatricopeptide_repeat 567 615
IPR002885 Pentatricopeptide_repeat 342 367
IPR002885 Pentatricopeptide_repeat 642 664
IPR002885 Pentatricopeptide_repeat 269 316
IPR046849 Eplus_motif 752 775
No external refs found!