Nbi_g10611

Description : not classified & original description: none

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g10611
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
Aev_g14240	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11608	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g29988	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g64809	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0033.g025048	No alias	not classified & original description: CDS=1403-2254	0.05	OrthoFinder output from all 47 species
Ceric.25G032700.1	Ceric.25G032700	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Ehy_g25246	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp4g02780.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Pnu_g07266	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17507	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g03727	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo76120	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003729	mRNA binding	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0035145	exon-exon junction complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	207	337
IPR011709	DEAD-box_helicase_OB_fold	555	631
IPR007502	Helicase-assoc_dom	402	473
IPR011545	DEAD/DEAH_box_helicase_dom	14	165

External Links

No external refs found!