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  5. Nbi_g11031

Nbi_g11031


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11031

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
AMTR_s00016p00115350 RARE1,... Pentatricopeptide repeat-containing protein At5g13270,... 0.03 OrthoFinder output from all 47 species
AT2G21090 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G05340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G24000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G28640 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G14050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G16835 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004459 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087178 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g096856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099198 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g101241 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18129 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23930 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13601 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28706 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38453 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g59941 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene35154.t1 Aspi01Gene35154 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012363 No alias not classified & original description: CDS=1-2442 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.04 OrthoFinder output from all 47 species
Cba_g05302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19893 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G053100.1 Ceric.02G053100 not classified & original description: pacid=50584513... 0.05 OrthoFinder output from all 47 species
Ceric.02G071400.1 Ceric.02G071400 not classified & original description: pacid=50584970... 0.04 OrthoFinder output from all 47 species
Ceric.07G030200.1 Ceric.07G030200 not classified & original description: pacid=50627452... 0.04 OrthoFinder output from all 47 species
Ceric.07G067300.1 Ceric.07G067300 not classified & original description: pacid=50625994... 0.04 OrthoFinder output from all 47 species
Ceric.09G062300.1 Ceric.09G062300 not classified & original description: pacid=50587557... 0.05 OrthoFinder output from all 47 species
Ceric.14G093100.1 EMB2758, Ceric.14G093100 not classified & original description: pacid=50634261... 0.04 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.04 OrthoFinder output from all 47 species
Ceric.30G037100.1 Ceric.30G037100 not classified & original description: pacid=50608918... 0.05 OrthoFinder output from all 47 species
Ceric.36G021900.1 Ceric.36G021900 not classified & original description: pacid=50568285... 0.04 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g02827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30267 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g30474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07693 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10087 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15843 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g17941 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22114 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23999 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28505 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g44017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48000 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20660 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_38292 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
LOC_Os03g56400.1 LOC_Os03g56400 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os07g39910.1 LOC_Os07g39910 Pentatricopeptide repeat-containing protein At1g25360... 0.06 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Len_g19021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54667 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05718 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06185 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_24849g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_38266g0010 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_81105g0010 REME1 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
Ore_g40050 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04430 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30631 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006801 EMB2261 not classified & original description: CDS=90-2282 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018953 No alias not classified & original description: CDS=533-943 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0111.g020712 EMB2758 not classified & original description: CDS=1-2046 0.02 OrthoFinder output from all 47 species
Sam_g01747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28859 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50108 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g081560.2.1 Solyc01g081560 Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Solyc01g099000.1.1 Solyc01g099000 Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
Solyc06g064600.1.1 Solyc06g064600 Pentatricopeptide repeat-containing protein At1g56690,... 0.04 OrthoFinder output from all 47 species
Spa_g21861 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06129 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g06435 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29210 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30136 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e023800_P003 PDE247, CLB19,... RNA editing factor (CLB19) 0.03 OrthoFinder output from all 47 species
Zm00001e028330_P001 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 539 586
IPR002885 Pentatricopeptide_repeat 742 789
IPR002885 Pentatricopeptide_repeat 438 485
IPR002885 Pentatricopeptide_repeat 135 183
IPR002885 Pentatricopeptide_repeat 843 890
IPR002885 Pentatricopeptide_repeat 237 283
IPR002885 Pentatricopeptide_repeat 615 641
IPR002885 Pentatricopeptide_repeat 643 671
IPR002885 Pentatricopeptide_repeat 342 368
No external refs found!