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  5. Nbi_g11760

Nbi_g11760


Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11760

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00055110 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Adi_g023800 No alias component *(cS23) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Adi_g086977 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g28969 No alias component *(cS23) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aob_g07615 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g18177 No alias component *(cS23) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Azfi_s0052.g031601 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cba_g17074 No alias component *(cS23) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Cba_g32123 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.23G039300.1 Ceric.23G039300 component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre02.g083950 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Len_g12700 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Len_g27723 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Len_g56473 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Lfl_g02667 No alias component *(cS23) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g07037 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pir_g18227 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ppi_g18636 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc05g009570.3.1 Solyc05g009570 component psPSRP3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Spa_g06637 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Tin_g12630 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Zm00001e007903_P001 Zm00001e007903 component psPSRP3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e041019_P001 Zm00001e041019 component psPSRP3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR006924 Ribosomal_PSRP3/Ycf65 778 824
No external refs found!