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  5. Nbi_g11883

Nbi_g11883


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11883
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Als_g18239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05074 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61596.t2 CRR22, Aspi01Gene61596 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene68781.t1 MEF21, Aspi01Gene68781 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011584 No alias not classified & original description: CDS=1-2754 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015813 No alias not classified & original description: CDS=355-3027 0.05 OrthoFinder output from all 47 species
Ceric.03G014400.1 Ceric.03G014400 not classified & original description: pacid=50572365... 0.04 OrthoFinder output from all 47 species
Ceric.27G069000.1 Ceric.27G069000 not classified & original description: pacid=50605685... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g24618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031849001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
GSVIVT01035837001 LPA66 Pentatricopeptide repeat-containing protein At4g21065... 0.05 OrthoFinder output from all 47 species
GSVIVT01036169001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_28758 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
LOC_Os03g04390.1 LOC_Os03g04390 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g39410.1 OTP86, LOC_Os04g39410 RNA editing factor (OTP86) 0.04 OrthoFinder output from all 47 species
Pir_g38691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57980 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015358 No alias not classified & original description: CDS=223-2631 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026675 No alias not classified & original description: CDS=1-1575 0.02 OrthoFinder output from all 47 species
Sam_g11781 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g17279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g081900.4.1 OTP84, Solyc02g081900 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
Spa_g14308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29172 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g54669 MEF9 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g55588 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17792 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.04 OrthoFinder output from all 47 species
Zm00001e041246_P001 Zm00001e041246 Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 624 648
IPR002885 Pentatricopeptide_repeat 218 241
IPR002885 Pentatricopeptide_repeat 114 142
IPR002885 Pentatricopeptide_repeat 420 445
IPR002885 Pentatricopeptide_repeat 347 391
IPR002885 Pentatricopeptide_repeat 546 593
IPR002885 Pentatricopeptide_repeat 447 492
IPR002885 Pentatricopeptide_repeat 243 290
IPR002885 Pentatricopeptide_repeat 143 189
No external refs found!