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  5. Nbi_g12274

Nbi_g12274 (SPT)


Aliases : SPT

Description : bHLH-type transcription factor & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12274

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00265010 HEC2,... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G50915 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g048981 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Als_g08145 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Als_g49595 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29424 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24464 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z051300.1 LRL3, Ceric.1Z051300 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g05640 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18802 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
GSVIVT01022120001 HEC1 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_21260 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
LOC_Os01g02110.1 RHD6, LOC_Os01g02110 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os03g51910.1 LOC_Os03g51910 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g08500.1 LRL3, LOC_Os06g08500 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Lfl_g37660 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Lfl_g39480 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_100071g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_158362g0010 CIB5 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
MA_83500g0010 HEC1 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Ppi_g28847 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ppi_g60624 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Smo404767 RSL4 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Smo409967 ATRSL1, RSL1 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Solyc02g091440.2.1 RHD6, Solyc02g091440 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc04g077960.1.1 RSL2, Solyc04g077960 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc09g057710.4.1 Solyc09g057710 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc12g088380.1.1 RSL2, Solyc12g088380 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc12g098620.2.1 Solyc12g098620 transcription factor (bHLH). transcriptional regulator (CIB) 0.06 OrthoFinder output from all 47 species
Spa_g41791 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13231 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000921_P005 Zm00001e000921 transcription factor (bHLH). transcriptional regulator (CIB) 0.01 OrthoFinder output from all 47 species
Zm00001e005554_P001 Zm00001e005554 transcription factor (bHLH). transcriptional regulator (CIB) 0.01 OrthoFinder output from all 47 species
Zm00001e011410_P001 Zm00001e011410 transcription factor (bHLH). transcriptional regulator (CIB) 0.01 OrthoFinder output from all 47 species
Zm00001e022005_P003 Zm00001e022005 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e034605_P003 Zm00001e034605 transcription factor (bHLH). transcriptional regulator (CIB) 0.01 OrthoFinder output from all 47 species
Zm00001e035422_P001 RSL4, Zm00001e035422 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e036318_P001 LRL1, Zm00001e036318 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 421 466
No external refs found!