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  5. Nbi_g12513

Nbi_g12513


Description : proline-tRNA ligase & original description: none


Gene families : OG0001971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g12513

Target Alias Description ECC score Gene Family Method Actions
AT5G52520 OVA6, PRORS1 Class II aaRS and biotin synthetases superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g05302 No alias proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01653 No alias proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11327 No alias proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.34G026500.1 Ceric.34G026500 proline-tRNA ligase & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001576.14 OVA6, PRORS1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001576.15 OVA6, PRORS1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Cre09.g406200 OVA6, PRORS1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Cre10.g429100 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Dcu_g01507 OVA6, PRORS1 proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os12g25710.1 LOC_Os12g25710 proline-tRNA ligase 0.02 OrthoFinder output from all 47 species
Len_g01828 No alias proline-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g25470.1 No alias proline-tRNA ligase 0.02 OrthoFinder output from all 47 species
Mp7g16630.1 OVA6, PRORS1 proline-tRNA ligase 0.03 OrthoFinder output from all 47 species
Pnu_g08357 OVA6, PRORS1 proline-tRNA ligase & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012789 No alias proline-tRNA ligase & original description: CDS=116-1726 0.02 OrthoFinder output from all 47 species
Sam_g11315 No alias proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09904 No alias proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15505 No alias proline-tRNA ligase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e007170_P001 Zm00001e007170 proline-tRNA ligase 0.03 OrthoFinder output from all 47 species
Zm00001e024670_P003 Zm00001e024670 proline-tRNA ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP HCCA
MF GO:0005347 ATP transmembrane transporter activity IEP HCCA
MF GO:0005471 ATP:ADP antiporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
CC GO:0009349 riboflavin synthase complex IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015215 nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015217 ADP transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR016061 Pro-tRNA_ligase_II_C 456 529
IPR004154 Anticodon-bd 333 424
IPR002314 aa-tRNA-synt_IIb 149 314
No external refs found!