Aliases : VAC1, ECB2, ATECB2
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00126p00080460 | OTP82,... | Pentatricopeptide repeat-containing protein At1g08070,... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G31430 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11260 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011584 | No alias | not classified & original description: CDS=1-2754 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0028.g023921 | No alias | not classified & original description: CDS=1-2157 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0035.g025464 | No alias | not classified & original description: CDS=1-2154 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0171.g055669 | No alias | not classified & original description: CDS=1-2286 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0221.g058730 | No alias | not classified & original description: CDS=1-747 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0237.g059606 | No alias | not classified & original description: CDS=1-2121 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0251.g060297 | No alias | not classified & original description: CDS=1-1806 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.29G050000.1 | Ceric.29G050000 | ssDNA-binding protein *(OSB) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.29G055100.1 | Ceric.29G055100 | not classified & original description: pacid=50625141... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g50973 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g15529 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g37225.1 | LOC_Os05g37225 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g14520 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g25719 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g36226 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g27740 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g11120 | REME1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0018.g007447 | No alias | not classified & original description: CDS=108-3026 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g12390 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g068810.4.1 | Solyc06g068810 | Pentatricopeptide repeat-containing protein At5g50990... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g08462 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g09309 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e041694_P001 | Zm00001e041694 | Pentatricopeptide repeat-containing protein At5g16860... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | IEP | HCCA |
| CC | GO:0005849 | mRNA cleavage factor complex | IEP | HCCA |
| BP | GO:0006378 | mRNA polyadenylation | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
| BP | GO:0043631 | RNA polyadenylation | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 228 | 258 |
| IPR002885 | Pentatricopeptide_repeat | 201 | 224 |
| IPR002885 | Pentatricopeptide_repeat | 507 | 528 |
| IPR002885 | Pentatricopeptide_repeat | 404 | 426 |
| IPR002885 | Pentatricopeptide_repeat | 98 | 123 |
| IPR002885 | Pentatricopeptide_repeat | 432 | 461 |
| IPR002885 | Pentatricopeptide_repeat | 21 | 70 |
| IPR002885 | Pentatricopeptide_repeat | 327 | 374 |
| IPR002885 | Pentatricopeptide_repeat | 124 | 170 |
| No external refs found! |
