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  5. Nbi_g13487

Nbi_g13487


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g13487

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00062590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Adi_g004061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040826 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096184 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116059 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46412 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07426 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70862 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0063.g035318 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1986 0.03 OrthoFinder output from all 47 species
Azfi_s0237.g059606 No alias not classified & original description: CDS=1-2121 0.04 OrthoFinder output from all 47 species
Azfi_s0332.g065427 No alias not classified & original description: CDS=1-3180 0.03 OrthoFinder output from all 47 species
Azfi_s0405.g068372 No alias not classified & original description: CDS=1-2844 0.04 OrthoFinder output from all 47 species
Azfi_s0408.g068443 No alias not classified & original description: CDS=1-2298 0.04 OrthoFinder output from all 47 species
Cba_g33015 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18657 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50518 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015521001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species
GSVIVT01024606001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
Len_g05333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g51033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g32360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41731 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20094 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22860 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30634 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05183 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09360 LOI1, MEF11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16300 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53936 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53939 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56081 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Tin_g26745 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29179 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44640 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016746 acyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 381 409
IPR002885 Pentatricopeptide_repeat 489 512
IPR002885 Pentatricopeptide_repeat 852 876
IPR002885 Pentatricopeptide_repeat 552 576
IPR002885 Pentatricopeptide_repeat 152 178
IPR002885 Pentatricopeptide_repeat 653 673
IPR002885 Pentatricopeptide_repeat 180 208
IPR002885 Pentatricopeptide_repeat 755 774
IPR002885 Pentatricopeptide_repeat 681 710
IPR002885 Pentatricopeptide_repeat 279 325
IPR002885 Pentatricopeptide_repeat 76 124
IPR002885 Pentatricopeptide_repeat 578 624
IPR002885 Pentatricopeptide_repeat 791 824
No external refs found!