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  5. Nbi_g15274

Nbi_g15274


Description : not classified & original description: none


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g15274

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00100040 evm_27.TU.AmTr_v1... 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Ala_g04413 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03211 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01385 OPCL1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g10363 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008694001 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_18695 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g04000.1 OPCL1, LOC_Os03g04000 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species
LOC_Os03g05780.1 LOC_Os03g05780 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
LOC_Os07g17970.1 LOC_Os07g17970 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Lfl_g01742 OPCL1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10432138g0010 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sam_g29127 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc12g094520.2.1 OPCL1, Solyc12g094520 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species
Spa_g28398 AT4CL2, 4CL2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g26630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004865_P001 Zm00001e004865 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Zm00001e032697_P002 Zm00001e032697 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 460 535
IPR000873 AMP-dep_Synth/Lig_com 41 451
No external refs found!